Processes


sample_sheet_generator	1
demux_align
interop_metrics	1
bclconvert	8
merge_fastqs_sample_r1	20
merge_fastqs_sample_r2	20
merge_fastqs_undetermined_r1		1
merge_fastqs_undetermined_r2	1
merge_illumina_stats_lane	1
merge_reports_lane	1
align	3		11
adapter_removal	14		6
parse_fastq_filename	14
qc
sample_depth
seq_qc_subwf
read_qc_script
reads_per_target_script
gc_bias_script
gc_bias_plots
depth_stats_script
saturation_plot_script
saturation_metric_script
fragment_size_script
contamination_script
merge_qc
mutation_rates
enrichment_statistics
bam_postprocess
postprocess_metrics
log_bam_postprocess_error_and_fail
log_postprocess_metrics_error_and_fail
list_failed_tasks