Error executing process > 'DAQ:CONTROL_VARIANT_CALLING:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed)'

Caused by:
  Process `DAQ:CONTROL_VARIANT_CALLING:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed)` terminated with an error exit status (2)


Command executed:

  awk -vFS="	" '{
      t = $5  # runtime estimate
      if (t == "") {
          # no runtime estimate in this row, assume default value
          t = ($3 - $2) / 15000
      }
      if (name == "" || (chunk > 600 && (chunk + t) > longest * 1.05)) {
          # start a new chunk
          name = sprintf("%s_%d-%d.bed", $1, $2+1, $3)
          chunk = 0
          longest = 0
      }
      if (t > longest)
          longest = t
      chunk += t
      print $0 > name
  }' xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed
  
  cat <<-END_VERSIONS > versions.yml
  "DAQ:CONTROL_VARIANT_CALLING:PREPARE_INTERVALS:CREATE_INTERVALS_BED":
      gawk: $(awk -Wversion | sed '1!d; s/.*Awk //; s/,.*//')
  END_VERSIONS

Command exit status:
  2

Command output:
  (empty)

Command error:
  awk: fatal: cannot open file `xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed' for reading: No such file or directory

Work dir:
  s3://natera-rnd-pltf-stage-nextflow-scratch-01/work/a8/8421f50b63933ae6589963ea16a8f4

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gawk:5.1.0

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`