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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume pltfinf-734-stage-labeltypo-1780552667
Error Report
Run pltfinf-734-stage-labeltypo-1780552667 was marked failed while stuck in registered. Runner pod: pltfinf-734-stage-labeltypo-1780552667-13846e8f-cxxjc Namespace: nextflow Phase: Failed Reason: Error Exit code: 1 Marked as failed: 2026-06-03 23:03:55 PDT --- Runner pod log tail --- Starting Nextflow workflow... Pipeline: https://gitlab.natera.com/rd-platform/bioinformatics/infrastructure/nextflow-pipeline-template Output: s3://natera-rnd-pltf-stage-nextflow-scratch-01/mipeters/pltfinf-734/1780552667 Logs: s3://natera-rnd-pltf-stage-nextflow-scratch-01/mipeters/pltfinf-734/1780552667/2026-06-04t05-57-47z.nextflow.log ==> STAGING COMPLETE Nextflow 26.04.3 is available - Please consider updating your version to it Unknown option: -label -- Check the available commands and options and syntax with 'help' Nextflow exited with code: 1 --- Kubernetes Events --- 2026-06-03 22:57:48 PDT Warning FailedScheduling x1: 0/9 nodes are available: 1 Insufficient memory, 3 node(s) didn't match Pod's node affinity/selector, 5 node(s) had untolerated taint(s). no new claims to deallocate, preemption: 0/9 nodes are available: 9 Preemption is not helpful for scheduling. 2026-06-03 22:57:50 PDT Normal Nominated x1: Pod should schedule on: nodeclaim/nextflow-runner-rr9dd 2026-06-03 22:58:07 PDT Warning FailedScheduling x3: 0/10 nodes are available: 1 Insufficient memory, 3 node(s) didn't match Pod's node affinity/selector, 6 node(s) had untolerated taint(s). no new claims to deallocate, preemption: 0/10 nodes are available: 10 Preemption is not helpful for scheduling. 2026-06-03 22:58:08 PDT Normal Scheduled x1: Successfully assigned nextflow/pltfinf-734-stage-labeltypo-1780552667-13846e8f-cxxjc to i-09bfb0cc6eeedc3d0 2026-06-03 22:58:18 PDT Normal Pulling x1: Pulling image "292967571998.dkr.ecr.us-west-2.amazonaws.com/pltf-nextflow:latest" 2026-06-03 22:58:32 PDT Normal Pulled x1: Successfully pulled image "292967571998.dkr.ecr.us-west-2.amazonaws.com/pltf-nextflow:latest" in 14.096s (14.096s including waiting). Image size: 456632041 bytes. 2026-06-03 22:58:32 PDT Normal Created x1: Container created 2026-06-03 22:58:32 PDT Normal Started x1: Container started
Workflow
- Language / Cluster
- Nextflow / pltf-stage
- Session ID
- ca02420e-3e69-4388-8f60-e3565ffa6349
- Source
- /
- Submitted By
- mipeters
- Resumed
- No
Cost and Runtime
- Status
- failed
- Outputs
- -
- Started
- Jun 03, 2026 10:57 PM
- Completed
- Jun 03, 2026 11:03 PM
- Duration
- 6m 6s
- Exit Status
- 1