Error executing process > 'SENTIEON_ALIGN_QC (test_sample_1)'

Caused by:
  Process `SENTIEON_ALIGN_QC (test_sample_1)` terminated with an error exit status (1)


Command executed:

  echo "=== Running Sentieon Alignment and QC on test_sample_1 ==="
  echo "SENTIEON_LICENSE: ${SENTIEON_LICENSE:0:5}..."
  echo "Downsampling to 100 reads (400 lines)"
  
  set +o pipefail
  zcat SRR7890919_WES_HCC1395BL-EA_normal_1.fastq.gz | head -n 400 | \
  sentieon bwa mem \
      -R "@RG\tID:test_sample_1\tSM:test_sample_1\tPL:ILLUMINA" \
      -t 8 \
      human_g1k_v37_decoy.fasta \
      - | \
  sentieon util sort \
      -r human_g1k_v37_decoy.fasta \
      -o test_sample_1_sorted.bam \
      -t 8 \
      --sam2bam -i -
  set -o pipefail
  
  sentieon driver \
      -r human_g1k_v37_decoy.fasta \
      -t 8 \
      -i test_sample_1_sorted.bam \
      --algo QualDistribution test_sample_1_qd_metrics.txt \
      --algo MeanQualityByCycle test_sample_1_mq_metrics.txt
  
  echo "Sentieon alignment and QC completed for test_sample_1"

Command exit status:
  1

Command output:
  === Running Sentieon Alignment and QC on test_sample_1 ===
  SENTIEON_LICENSE: ...
  Downsampling to 100 reads (400 lines)

Command error:
  Failed to open sentieon license file : No such file or directory
  cmdline: /opt/sentieon/sentieon-genomics-202308.03/libexec/util sort -r human_g1k_v37_decoy.fasta -o test_sample_1_sorted.bam -t 8 --sam2bam -i -
  Failed to open sentieon license file : No such file or directory

Work dir:
  s3://natera-rnd-pltf-stage-nextflow-scratch-01/work/de/49f5b67af390c2102cb0b4748c6599

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/nextflow-pipeline-template/sentieon:latest

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`